J3_8BHF_016
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCG*UUCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8BHF|1|A3|C|1138, 8BHF|1|A3|A|1150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A3|C|1094
8BHF|1|A3|C|1095
8BHF|1|A3|G|1096
*
8BHF|1|A3|U|1136
8BHF|1|A3|U|1137
8BHF|1|A3|C|1138
8BHF|1|A3|C|1139
8BHF|1|A3|G|1140
*
8BHF|1|A3|C|1147
8BHF|1|A3|A|1148
8BHF|1|A3|A|1149
8BHF|1|A3|A|1150
8BHF|1|A3|G|1151
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain B3
- 40S_SA_C domain-containing protein
- Chain O3
- ribosomal protein uS15
- Chain W3
- 40S ribosomal protein S21
- Chain X3
- Ribosomal protein S15a
- Chain b3
- 40S ribosomal protein S26
- Chain c3
- 40S ribosomal protein S27
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