J3_8BHF_028

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8BHF|1|A2|C|705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|451
8BHF|1|A2|A|452
8BHF|1|A2|G|453
8BHF|1|A2|U|454
8BHF|1|A2|C|455
*
8BHF|1|A2|G|702
8BHF|1|A2|U|703
8BHF|1|A2|G|704
8BHF|1|A2|C|705
8BHF|1|A2|G|706
*
8BHF|1|A2|C|1290
8BHF|1|A2|G|1291
8BHF|1|A2|A|1292
8BHF|1|A2|U|1293
8BHF|1|A2|G|1294

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein L32

Chain S1

60S ribosomal protein L35a

Chain n3

60S ribosomal protein L6