J3_8BHF_032
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 8BHF|1|A2|C|2473, 8BHF|1|A2|A|2475, 8BHF|1|A2|G|2478
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|A|2454
8BHF|1|A2|G|2455
8BHF|1|A2|A|2456
8BHF|1|A2|U|2457
8BHF|1|A2|G|2458
8BHF|1|A2|G|2459
*
8BHF|1|A2|C|2468
8BHF|1|A2|G|2469
8BHF|1|A2|U|2470
8BHF|1|A2|U|2471
8BHF|1|A2|C|2472
8BHF|1|A2|C|2473
8BHF|1|A2|G|2474
8BHF|1|A2|A|2475
8BHF|1|A2|A|2476
8BHF|1|A2|G|2477
8BHF|1|A2|G|2478
8BHF|1|A2|G|2479
*
8BHF|1|A2|C|2504
8BHF|1|A2|A|2505
8BHF|1|A2|G|2506
8BHF|1|A2|C|2507
8BHF|1|A2|C|2508
8BHF|1|A2|G|2509
8BHF|1|A2|A|2510
8BHF|1|A2|U|2511
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain W1
- Ribosomal protein L37
- Chain j3
- 60S ribosomal protein L8
- Chain p3
- 60S ribosomal protein L7a
Coloring options: