J3_8BHF_036

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8BHF|1|A2|U|4864, 8BHF|1|A2|A|4920, 8BHF|1|A2|C|4922, 8BHF|1|A2|A|4925, 8BHF|1|A2|C|4926, 8BHF|1|A2|U|4932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|4735
8BHF|1|A2|G|4736
8BHF|1|A2|G|4737
8BHF|1|A2|U|4738
8BHF|1|A2|U|4739
8BHF|1|A2|G|4740
*
8BHF|1|A2|C|4861
8BHF|1|A2|C|4862
8BHF|1|A2|U|4863
8BHF|1|A2|U|4864
8BHF|1|A2|C|4865
*
8BHF|1|A2|G|4918
8BHF|1|A2|C|4919
8BHF|1|A2|A|4920
8BHF|1|A2|C|4921
8BHF|1|A2|C|4922
8BHF|1|A2|G|4923
8BHF|1|A2|C|4924
8BHF|1|A2|A|4925
8BHF|1|A2|C|4926
8BHF|1|A2|G|4927
8BHF|1|A2|U|4928
8BHF|1|A2|U|4929
8BHF|1|A2|C|4930
8BHF|1|A2|G|4931
8BHF|1|A2|U|4932
8BHF|1|A2|G|4933

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain S1

60S ribosomal protein L35a

Chain n3

60S ribosomal protein L6

Chain u3

60S ribosomal protein L14