3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8BHJ|1|2|A|975, 8BHJ|1|2|G|976, 8BHJ|1|2|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHJ_012 not in the Motif Atlas
Geometric match to J3_5J7L_006
Geometric discrepancy: 0.2385
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8BHJ|1|2|U|955
8BHJ|1|2|U|956
8BHJ|1|2|U|957
8BHJ|1|2|A|958
8BHJ|1|2|A|959
8BHJ|1|2|U|960
8BHJ|1|2|U|961
8BHJ|1|2|C|962
*
8BHJ|1|2|G|973
8BHJ|1|2|A|974
8BHJ|1|2|A|975
8BHJ|1|2|G|976
8BHJ|1|2|A|977
8BHJ|1|2|A|978
8BHJ|1|2|C|979
8BHJ|1|2|C|980
8BHJ|1|2|U|981
8BHJ|1|2|U|982
8BHJ|1|2|A|983
8BHJ|1|2|C|984
*
8BHJ|1|2|G|1221
8BHJ|1|2|G|1222
8BHJ|1|2|C|1223
8BHJ|1|2|U|1224
8BHJ|1|2|A|1225

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain n
30S ribosomal protein S10
Chain q
30S ribosomal protein S13
Chain r
30S ribosomal protein S14
Chain w
30S ribosomal protein S19

Coloring options:


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