J3_8BHJ_018

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8BHJ|1|0|A|504, 8BHJ|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHJ_018 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1495

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8BHJ|1|0|G|30
8BHJ|1|0|C|31
*
8BHJ|1|0|G|474
8BHJ|1|0|C|475
8BHJ|1|0|G|476
8BHJ|1|0|A|477
8BHJ|1|0|A|478
8BHJ|1|0|A|479
8BHJ|1|0|A|480
8BHJ|1|0|G|481
8BHJ|1|0|A|482
8BHJ|1|0|A|483
8BHJ|1|0|C|484
*
8BHJ|1|0|G|496
8BHJ|1|0|A|497
8BHJ|1|0|G|498
8BHJ|1|0|U|499
8BHJ|1|0|G|500
8BHJ|1|0|A|501
8BHJ|1|0|A|502
8BHJ|1|0|A|503
8BHJ|1|0|A|504
8BHJ|1|0|A|505
8BHJ|1|0|G|506
8BHJ|1|0|A|507
8BHJ|1|0|A|508
8BHJ|1|0|C|509
8BHJ|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24