3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8BHJ|1|0|U|34, 8BHJ|1|0|U|448, 8BHJ|1|0|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHJ_019 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1036
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8BHJ|1|0|C|32
8BHJ|1|0|C|33
8BHJ|1|0|U|34
8BHJ|1|0|G|35
*
8BHJ|1|0|C|445
8BHJ|1|0|G|446
8BHJ|1|0|A|447
8BHJ|1|0|U|448
8BHJ|1|0|A|449
8BHJ|1|0|G|450
8BHJ|1|0|U|451
8BHJ|1|0|G|452
8BHJ|1|0|A|453
8BHJ|1|0|A|454
8BHJ|1|0|C|455
8BHJ|1|0|C|456
8BHJ|1|0|A|457
8BHJ|1|0|G|458
8BHJ|1|0|U|459
8BHJ|1|0|A|460
8BHJ|1|0|C|461
*
8BHJ|1|0|G|468
8BHJ|1|0|G|469
8BHJ|1|0|A|470
8BHJ|1|0|A|471
8BHJ|1|0|A|472
8BHJ|1|0|G|473

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain N
50S ribosomal protein L20
Chain Q
50S ribosomal protein L23
Chain c
50S ribosomal protein L34

Coloring options:


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