3D structure

PDB id
8BHN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
8BHN|1|0|U|2833, 8BHN|1|0|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHN_008 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1958
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

8BHN|1|0|G|2812
8BHN|1|0|A|2813
8BHN|1|0|A|2814
8BHN|1|0|C|2815
*
8BHN|1|0|G|2831
8BHN|1|0|U|2832
8BHN|1|0|U|2833
8BHN|1|0|G|2834
8BHN|1|0|A|2835
8BHN|1|0|U|2836
*
8BHN|1|0|A|2882
8BHN|1|0|A|2883
8BHN|1|0|U|2884
8BHN|1|0|G|2885
8BHN|1|0|A|2886
8BHN|1|0|A|2887
8BHN|1|0|C|2888

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain K
50S ribosomal protein L17
Chain P
50S ribosomal protein L22
Chain a
50S ribosomal protein L32

Coloring options:


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