J3_8BHN_016

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHN_016 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.1259

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8BHN|1|0|G|30
8BHN|1|0|C|31
*
8BHN|1|0|G|474
8BHN|1|0|C|475
8BHN|1|0|G|476
8BHN|1|0|A|477
8BHN|1|0|A|478
8BHN|1|0|A|479
8BHN|1|0|A|480
8BHN|1|0|G|481
*
8BHN|1|0|C|509
8BHN|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24