J3_8BHP_024

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHP_024 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1371

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8BHP|1|0|G|1424
8BHP|1|0|G|1425
8BHP|1|0|G|1426
8BHP|1|0|A|1427
8BHP|1|0|C|1428
8BHP|1|0|G|1429
*
8BHP|1|0|C|1564
8BHP|1|0|C|1565
*
8BHP|1|0|G|1568
8BHP|1|0|A|1569
8BHP|1|0|A|1570
8BHP|1|0|A|1571
8BHP|1|0|A|1572
8BHP|1|0|G|1573
8BHP|1|0|C|1574

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2