J3_8BIL_005

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIL_005 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0844

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8BIL|1|0|C|2091
8BIL|1|0|U|2092
8BIL|1|0|G|2093
*
8BIL|1|0|C|2196
8BIL|1|0|U|2197
8BIL|1|0|A|2198
8BIL|1|0|A|2199
8BIL|1|0|C|2200
*
8BIL|1|0|G|2223
8BIL|1|0|G|2224
8BIL|1|0|A|2225
8BIL|1|0|C|2226
8BIL|1|0|A|2227
8BIL|1|0|G|2228

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28