J3_8BIL_016

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIL_016 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1344

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8BIL|1|0|G|30
8BIL|1|0|C|31
*
8BIL|1|0|G|474
8BIL|1|0|C|475
8BIL|1|0|G|476
8BIL|1|0|A|477
8BIL|1|0|A|478
8BIL|1|0|A|479
8BIL|1|0|A|480
8BIL|1|0|G|481
*
8BIL|1|0|C|509
8BIL|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24