J3_8BIL_030

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIL_030 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0933

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8BIL|1|2|C|936
8BIL|1|2|A|937
8BIL|1|2|A|938
8BIL|1|2|G|939
*
8BIL|1|2|C|1344
8BIL|1|2|U|1345
8BIL|1|2|A|1346
8BIL|1|2|G|1347
8BIL|1|2|U|1348
8BIL|1|2|A|1349
8BIL|1|2|A|1350
*
8BIL|1|2|U|1372
8BIL|1|2|G|1373
8BIL|1|2|A|1374
8BIL|1|2|A|1375
8BIL|1|2|U|1376
8BIL|1|2|A|1377
8BIL|1|2|C|1378
8BIL|1|2|G|1379

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain m

30S ribosomal protein S9