J3_8BIM_019

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8BIM|1|0|U|34, 8BIM|1|0|U|448, 8BIM|1|0|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_019 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0939

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|C|32
8BIM|1|0|C|33
8BIM|1|0|U|34
8BIM|1|0|G|35
*
8BIM|1|0|C|445
8BIM|1|0|G|446
8BIM|1|0|A|447
8BIM|1|0|U|448
8BIM|1|0|A|449
8BIM|1|0|G|450
8BIM|1|0|U|451
8BIM|1|0|G|452
8BIM|1|0|A|453
8BIM|1|0|A|454
8BIM|1|0|C|455
8BIM|1|0|C|456
8BIM|1|0|A|457
8BIM|1|0|G|458
8BIM|1|0|U|459
8BIM|1|0|A|460
8BIM|1|0|C|461
*
8BIM|1|0|G|468
8BIM|1|0|G|469
8BIM|1|0|A|470
8BIM|1|0|A|471
8BIM|1|0|A|472
8BIM|1|0|G|473

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain N

50S ribosomal protein L20

Chain Q

50S ribosomal protein L23

Chain c

50S ribosomal protein L34