J3_8BIM_032

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_032 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0926

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8BIM|1|2|C|936
8BIM|1|2|A|937
8BIM|1|2|A|938
8BIM|1|2|G|939
*
8BIM|1|2|C|1344
8BIM|1|2|U|1345
8BIM|1|2|A|1346
8BIM|1|2|G|1347
8BIM|1|2|U|1348
8BIM|1|2|A|1349
8BIM|1|2|A|1350
*
8BIM|1|2|U|1372
8BIM|1|2|G|1373
8BIM|1|2|A|1374
8BIM|1|2|A|1375
8BIM|1|2|U|1376
8BIM|1|2|A|1377
8BIM|1|2|C|1378
8BIM|1|2|G|1379

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain m

30S ribosomal protein S9