3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
8BIP|1|1|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BIP_003 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.102
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

8BIP|1|1|U|502
8BIP|1|1|C|503
*
8BIP|1|1|G|588
8BIP|1|1|A|589
8BIP|1|1|G|590
8BIP|1|1|G|591
8BIP|1|1|A|592
8BIP|1|1|C|593
8BIP|1|1|U|594
8BIP|1|1|G|595
8BIP|1|1|C|596
8BIP|1|1|G|597
*
8BIP|1|1|C|606
8BIP|1|1|A|607
8BIP|1|1|A|608
8BIP|1|1|G|609
8BIP|1|1|G|610
8BIP|1|1|A|611

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4-A
Chain LE
60S ribosomal protein L6-B
Chain LF
60S ribosomal protein L7-A
Chain Le
60S ribosomal protein L32

Coloring options:


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