3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAC*GCUAAGG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BIP_007 not in the Motif Atlas
Homologous match to J3_8C3A_005
Geometric discrepancy: 0.2479
The information below is about J3_8C3A_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.3
Basepair signature
cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
7

Unit IDs

8BIP|1|1|G|1230
8BIP|1|1|A|1231
8BIP|1|1|C|1232
*
8BIP|1|1|G|1256
8BIP|1|1|C|1257
8BIP|1|1|U|1258
8BIP|1|1|A|1259
8BIP|1|1|A|1260
8BIP|1|1|G|1261
8BIP|1|1|G|1262
*
8BIP|1|1|C|1277
8BIP|1|1|A|1278
8BIP|1|1|C|1279

Current chains

Chain 1
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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