3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
8BIP|1|1|A|398, 8BIP|1|1|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BIP_020 not in the Motif Atlas
Homologous match to J3_8P9A_047
Geometric discrepancy: 0.0812
The information below is about J3_8P9A_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8BIP|1|1|A|369
8BIP|1|1|U|370
8BIP|1|1|G|371
8BIP|1|1|A|372
8BIP|1|1|A|373
8BIP|1|1|A|374
8BIP|1|1|A|375
8BIP|1|1|G|376
8BIP|1|1|A|377
8BIP|1|1|A|378
8BIP|1|1|C|379
*
8BIP|1|1|G|390
8BIP|1|1|A|391
8BIP|1|1|G|392
8BIP|1|1|U|393
8BIP|1|1|G|394
8BIP|1|1|A|395
8BIP|1|1|A|396
8BIP|1|1|A|397
8BIP|1|1|A|398
8BIP|1|1|A|399
8BIP|1|1|G|400
8BIP|1|1|U|401
8BIP|1|1|A|402
8BIP|1|1|C|403
8BIP|1|1|G|404
*
8BIP|1|C3|C|19
8BIP|1|C3|U|20

Current chains

Chain 1
25S rRNA
Chain C3
5.8S rRNA

Nearby chains

Chain 8
Nascent peptide chain
Chain LC
60S ribosomal protein L4-A
Chain LP
60S ribosomal protein L17-A
Chain LY
60S ribosomal protein L26-A
Chain Ll
60S ribosomal protein L39

Coloring options:


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