3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
8BIP|1|1|C|2760, 8BIP|1|1|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BIP_023 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.0698
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

8BIP|1|1|G|2651
8BIP|1|1|U|2652
8BIP|1|1|C|2653
*
8BIP|1|1|G|2754
8BIP|1|1|C|2755
8BIP|1|1|C|2756
8BIP|1|1|U|2757
8BIP|1|1|A|2758
8BIP|1|1|U|2759
8BIP|1|1|C|2760
8BIP|1|1|G|2761
8BIP|1|1|A|2762
8BIP|1|1|U|2763
8BIP|1|1|C|2764
8BIP|1|1|C|2765
*
8BIP|1|1|G|2793
8BIP|1|1|G|2794
8BIP|1|1|U|2795
8BIP|1|1|G|2796
8BIP|1|1|C|2797
8BIP|1|1|C|2798

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LQ
60S ribosomal protein L18-A
Chain LT
60S ribosomal protein L21-A
Chain La
60S ribosomal protein L28
Chain Lo
60S ribosomal protein L42-A

Coloring options:


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