J3_8BJQ_007

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BJQ_007 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2464

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8BJQ|1|1|G|1230
8BJQ|1|1|A|1231
8BJQ|1|1|C|1232
*
8BJQ|1|1|G|1256
8BJQ|1|1|C|1257
8BJQ|1|1|U|1258
8BJQ|1|1|A|1259
8BJQ|1|1|A|1260
8BJQ|1|1|G|1261
8BJQ|1|1|G|1262
*
8BJQ|1|1|C|1277
8BJQ|1|1|A|1278
8BJQ|1|1|C|1279

Current chains

Chain 1

25S rRNA

Nearby chains