J3_8BN3_013
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8BN3|1|2|A|1080
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_013 not in the Motif Atlas
- Homologous match to J3_8C3A_037
- Geometric discrepancy: 0.1205
- The information below is about J3_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95208.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BN3|1|2|C|1037
8BN3|1|2|U|1038
8BN3|1|2|A|1039
*
8BN3|1|2|U|1066
8BN3|1|2|U|1067
8BN3|1|2|A|1068
8BN3|1|2|C|1069
8BN3|1|2|G|1070
*
8BN3|1|2|C|1077
8BN3|1|2|A|1078
8BN3|1|2|A|1079
8BN3|1|2|A|1080
8BN3|1|2|G|1081
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D1
- Small ribosomal subunit protein eS21A
- Chain D2
- RPS22A isoform 1
- Chain D6
- RPS26B isoform 1
- Chain D7
- 40S ribosomal protein S27-A
- Chain S0
- Small ribosomal subunit protein uS2A
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