J3_8BN3_014
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_014 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.112
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BN3|1|2|C|1148
8BN3|1|2|C|1149
8BN3|1|2|A|1150
8BN3|1|2|G|1151
*
8BN3|1|2|C|1568
8BN3|1|2|U|1569
8BN3|1|2|A|1570
8BN3|1|2|G|1571
8BN3|1|2|U|1572
8BN3|1|2|A|1573
8BN3|1|2|A|1574
*
8BN3|1|2|U|1596
8BN3|1|2|G|1597
8BN3|1|2|A|1598
8BN3|1|2|U|1599
8BN3|1|2|U|1600
8BN3|1|2|A|1601
8BN3|1|2|C|1602
8BN3|1|2|G|1603
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain D8
- RPS28A isoform 1
- Chain S5
- Rps5p
Coloring options: