J3_8BN3_016
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8BN3|1|2|G|1186, 8BN3|1|2|G|1188, 8BN3|1|2|A|1190
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_016 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.0627
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8BN3|1|2|C|1167
8BN3|1|2|U|1168
8BN3|1|2|U|1169
8BN3|1|2|A|1170
8BN3|1|2|A|1171
8BN3|1|2|U|1172
8BN3|1|2|U|1173
8BN3|1|2|U|1174
*
8BN3|1|2|G|1185
8BN3|1|2|G|1186
8BN3|1|2|G|1187
8BN3|1|2|G|1188
8BN3|1|2|A|1189
8BN3|1|2|A|1190
8BN3|1|2|A|1191
8BN3|1|2|C|1192
8BN3|1|2|U|1193
8BN3|1|2|C|1194
8BN3|1|2|A|1195
8BN3|1|2|C|1196
*
8BN3|1|2|G|1441
8BN3|1|2|G|1442
8BN3|1|2|C|1443
8BN3|1|2|C|1444
8BN3|1|2|G|1445
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C5
- RPS15 isoform 1
- Chain C8
- 40S ribosomal protein S18-A
- Chain D0
- RPS20 isoform 1
- Chain D9
- RPS29A isoform 1
- Chain SM
- STM1 isoform 1
Coloring options: