J3_8BN3_018
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_018 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1223
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BN3|1|2|U|1270
8BN3|1|2|C|1271
8BN3|1|2|U|1272
8BN3|1|2|U|1273
8BN3|1|2|A|1274
8BN3|1|2|G|1275
*
8BN3|1|2|C|1314
8BN3|1|2|G|1315
8BN3|1|2|A|1316
8BN3|1|2|G|1317
8BN3|1|2|A|1318
8BN3|1|2|C|1319
*
8BN3|1|2|G|1406
8BN3|1|2|C|1407
8BN3|1|2|A|1408
8BN3|1|2|A|1409
8BN3|1|2|U|1410
8BN3|1|2|A|1411
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C7
- ES17
- Chain D0
- RPS20 isoform 1
- Chain D9
- RPS29A isoform 1
- Chain S2
- RPS2 isoform 1
- Chain S3
- 40S ribosomal protein S3
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