J3_8BN3_019
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8BN3|1|2|U|1400, 8BN3|1|2|U|1401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_019 not in the Motif Atlas
- Homologous match to J3_8C3A_043
- Geometric discrepancy: 0.1253
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8BN3|1|2|A|1323
8BN3|1|2|A|1324
8BN3|1|2|C|1325
*
8BN3|1|2|G|1373
8BN3|1|2|G|1374
8BN3|1|2|A|1375
8BN3|1|2|C|1376
*
8BN3|1|2|G|1399
8BN3|1|2|U|1400
8BN3|1|2|U|1401
8BN3|1|2|U|1402
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C7
- ES17
- Chain D0
- RPS20 isoform 1
- Chain D9
- RPS29A isoform 1
- Chain S5
- Rps5p
- Chain SR
- Small ribosomal subunit protein RACK1
Coloring options: