3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
8BN3|1|2|U|1460, 8BN3|1|2|G|1526
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BN3_020 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.172
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

8BN3|1|2|C|1457
8BN3|1|2|A|1458
8BN3|1|2|C|1459
8BN3|1|2|U|1460
8BN3|1|2|G|1461
*
8BN3|1|2|C|1520
8BN3|1|2|G|1521
8BN3|1|2|U|1522
8BN3|1|2|G|1523
8BN3|1|2|C|1524
8BN3|1|2|U|1525
8BN3|1|2|G|1526
8BN3|1|2|G|1527
*
8BN3|1|2|C|1558
8BN3|1|2|G|1559
8BN3|1|2|A|1560
8BN3|1|2|G|1561

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C8
40S ribosomal protein S18-A
Chain C9
40S ribosomal protein S19-A
Chain D5
40S ribosomal protein S25
Chain S5
Rps5p

Coloring options:


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