J3_8BN3_020
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8BN3|1|2|U|1460, 8BN3|1|2|G|1526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_020 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.172
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BN3|1|2|C|1457
8BN3|1|2|A|1458
8BN3|1|2|C|1459
8BN3|1|2|U|1460
8BN3|1|2|G|1461
*
8BN3|1|2|C|1520
8BN3|1|2|G|1521
8BN3|1|2|U|1522
8BN3|1|2|G|1523
8BN3|1|2|C|1524
8BN3|1|2|U|1525
8BN3|1|2|G|1526
8BN3|1|2|G|1527
*
8BN3|1|2|C|1558
8BN3|1|2|G|1559
8BN3|1|2|A|1560
8BN3|1|2|G|1561
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C8
- 40S ribosomal protein S18-A
- Chain C9
- 40S ribosomal protein S19-A
- Chain D5
- 40S ribosomal protein S25
- Chain S5
- Rps5p
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