J3_8BN3_034

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BN3_034 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0789

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8BN3|1|2|A|41
8BN3|1|2|G|42
*
8BN3|1|2|C|433
8BN3|1|2|G|434
8BN3|1|2|C|435
8BN3|1|2|A|436
8BN3|1|2|A|437
8BN3|1|2|A|438
8BN3|1|2|U|439
*
8BN3|1|2|A|464
8BN3|1|2|G|465
8BN3|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S9

Small ribosomal subunit protein uS4A