J3_8BN3_036

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGA*UAAUA*UA

Length

10 nucleotides

Bulged bases

8BN3|1|2|U|864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BN3_036 not in the Motif Atlas

Geometric match to J3_4V88_080

Geometric discrepancy: 0.0727

The information below is about J3_4V88_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.3

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8BN3|1|2|U|633
8BN3|1|2|G|634
8BN3|1|2|A|635
*
8BN3|1|2|U|861
8BN3|1|2|A|862
8BN3|1|2|A|863
8BN3|1|2|U|864
8BN3|1|2|A|865
*
8BN3|1|2|U|965
8BN3|1|2|A|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A

Chain C3

40S ribosomal protein S13

Chain D2

RPS22A isoform 1

Chain D3

40S ribosomal protein S23-A

Chain D7

40S ribosomal protein S27-A

Chain S7

40S ribosomal protein S7-A