J3_8BN3_038

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BN3_038 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0538

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BN3|1|2|U|1280
8BN3|1|2|G|1281
*
8BN3|1|2|U|1290
8BN3|1|2|G|1291
8BN3|1|2|U|1292
8BN3|1|2|C|1293
*
8BN3|1|2|G|1305
8BN3|1|2|A|1306
8BN3|1|2|U|1307
8BN3|1|2|A|1308
8BN3|1|2|A|1309

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

ES17

Chain S0

Small ribosomal subunit protein uS2A

Chain S2

RPS2 isoform 1