J3_8BN3_041
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8BN3|1|4|U|60, 8BN3|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_041 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0591
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BN3|1|4|A|44
8BN3|1|4|C|45
*
8BN3|1|4|G|58
8BN3|1|4|A|59
8BN3|1|4|U|60
8BN3|1|4|A|61
8BN3|1|4|C|62
8BN3|1|4|G|63
8BN3|1|4|U|64
*
8BN3|1|4|A|96
8BN3|1|4|A|97
8BN3|1|4|U|98
8BN3|1|4|C|99
8BN3|1|4|U|100
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain N5
- 60S ribosomal protein L25
- Chain O5
- 60S ribosomal protein L35-A
- Chain O7
- Large ribosomal subunit protein eL37A
- Chain O9
- 60S ribosomal protein L39
Coloring options: