J3_8BPO_001
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 8BPO|1|A1|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|112
8BPO|1|A1|A|113
8BPO|1|A1|G|114
8BPO|1|A1|C|115
8BPO|1|A1|G|116
*
8BPO|1|A1|C|155
8BPO|1|A1|G|156
8BPO|1|A1|U|157
8BPO|1|A1|A|158
8BPO|1|A1|C|159
8BPO|1|A1|G|160
*
8BPO|1|A1|C|275
8BPO|1|A1|C|276
8BPO|1|A1|G|277
8BPO|1|A1|G|278
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain G2
- 60S ribosomal protein L7a
- Chain K2
- 60S ribosomal protein L13
- Chain M2
- Ribosomal protein L15
- Chain g2
- 60S ribosomal protein L35
- Chain h2
- 60S ribosomal protein L36
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