J3_8BPO_004
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 8BPO|1|A1|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BPO_004 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.163
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BPO|1|A1|G|1545
8BPO|1|A1|C|1546
8BPO|1|A1|A|1547
8BPO|1|A1|G|1548
*
8BPO|1|A1|C|1580
8BPO|1|A1|G|1581
8BPO|1|A1|U|1582
8BPO|1|A1|A|1583
8BPO|1|A1|G|1584
*
8BPO|1|A1|U|1609
8BPO|1|A1|C|1610
8BPO|1|A1|C|1611
8BPO|1|A1|G|1612
8BPO|1|A1|A|1613
8BPO|1|A1|C|1614
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain Q2
- 60S ribosomal protein L19
- Chain f2
- 60S ribosomal protein L34
- Chain o2
- 60S ribosomal protein L37a
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