J3_8BPO_007

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8BPO|1|A1|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|A|2551
8BPO|1|A1|G|2552
8BPO|1|A1|A|2553
8BPO|1|A1|U|2554
8BPO|1|A1|G|2555
*
8BPO|1|A1|C|2572
8BPO|1|A1|A|2573
8BPO|1|A1|G|2574
8BPO|1|A1|U|2575
*
8BPO|1|A1|A|2757
8BPO|1|A1|G|2758
8BPO|1|A1|G|2759
8BPO|1|A1|G|2760
8BPO|1|A1|U|2761
8BPO|1|A1|G|2762
8BPO|1|A1|U|2763
8BPO|1|A1|A|2764
8BPO|1|A1|A|2765
8BPO|1|A1|A|2766
8BPO|1|A1|U|2767

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain Y2

60S ribosomal protein L27