J3_8BPO_010
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8BPO|1|A1|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BPO_010 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.0954
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BPO|1|A1|C|4241
8BPO|1|A1|U|4242
8BPO|1|A1|C|4243
*
8BPO|1|A1|G|4267
8BPO|1|A1|A|4268
8BPO|1|A1|G|4269
*
8BPO|1|A1|C|4278
8BPO|1|A1|A|4279
8BPO|1|A1|A|4280
8BPO|1|A1|A|4281
8BPO|1|A1|A|4282
8BPO|1|A1|G|4283
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B1
- 5S ribosomal RNA; 5S rRNA
- Chain D2
- Ribosomal_L18_c domain-containing protein
- Chain J2
- 60S ribosomal protein L11
- Chain S2
- 60S ribosomal protein L21
- Chain n2
- 60S ribosomal protein L36a-like
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