J3_8BPO_015
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BPO_015 not in the Motif Atlas
- Geometric match to J3_5J7L_036
- Geometric discrepancy: 0.0822
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BPO|1|A1|U|380
8BPO|1|A1|U|381
8BPO|1|A1|G|382
8BPO|1|A1|A|383
8BPO|1|A1|A|384
8BPO|1|A1|A|385
8BPO|1|A1|A|386
8BPO|1|A1|G|387
*
8BPO|1|A1|C|414
8BPO|1|A1|G|415
*
8BPO|1|C1|C|19
8BPO|1|C1|A|20
Current chains
- Chain A1
- 28S ribosomal RNA
- Chain C1
- 5.8S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain X2
- Ribosomal protein L26
- Chain k2
- 60S ribosomal protein L39-like
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