J3_8BPO_016
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8BPO|1|A1|G|409, 8BPO|1|A1|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BPO_016 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2966
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BPO|1|A1|U|380
8BPO|1|A1|U|381
8BPO|1|A1|G|382
8BPO|1|A1|A|383
8BPO|1|A1|A|384
8BPO|1|A1|A|385
8BPO|1|A1|A|386
8BPO|1|A1|G|387
8BPO|1|A1|A|388
8BPO|1|A1|A|389
8BPO|1|A1|C|390
*
8BPO|1|A1|G|401
8BPO|1|A1|A|402
8BPO|1|A1|G|403
8BPO|1|A1|U|404
8BPO|1|A1|U|405
8BPO|1|A1|C|406
8BPO|1|A1|A|407
8BPO|1|A1|A|408
8BPO|1|A1|G|409
8BPO|1|A1|A|410
8BPO|1|A1|G|411
8BPO|1|A1|G|412
8BPO|1|A1|G|413
8BPO|1|A1|C|414
8BPO|1|A1|G|415
*
8BPO|1|C1|C|19
8BPO|1|C1|A|20
Current chains
- Chain A1
- 28S ribosomal RNA
- Chain C1
- 5.8S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain O2
- 60S ribosomal protein L17
- Chain X2
- Ribosomal protein L26
- Chain k2
- 60S ribosomal protein L39-like
- Chain t2
- Tetratricopeptide repeat protein 5
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