J3_8BPO_024
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8BPO|1|A1|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BPO_024 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0702
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8BPO|1|A1|G|4228
8BPO|1|A1|U|4229
8BPO|1|A1|C|4230
*
8BPO|1|A1|G|4331
8BPO|1|A1|C|4332
8BPO|1|A1|C|4333
8BPO|1|A1|U|4334
8BPO|1|A1|C|4335
8BPO|1|A1|A|4336
8BPO|1|A1|C|4337
8BPO|1|A1|G|4338
8BPO|1|A1|A|4339
8BPO|1|A1|U|4340
8BPO|1|A1|C|4341
8BPO|1|A1|C|4342
*
8BPO|1|A1|G|4370
8BPO|1|A1|G|4371
8BPO|1|A1|U|4372
8BPO|1|A1|G|4373
8BPO|1|A1|U|4374
8BPO|1|A1|C|4375
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain P2
- Ribosomal protein L18
- Chain S2
- 60S ribosomal protein L21
- Chain Z2
- 60S ribosomal protein L27a
- Chain n2
- 60S ribosomal protein L36a-like
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