J3_8BQD_019
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|1065, 8BQD|1|BQ|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_019 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.3549
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|BQ|U|986
8BQD|1|BQ|U|987
*
8BQD|1|BQ|A|1062
8BQD|1|BQ|G|1063
8BQD|1|BQ|A|1064
8BQD|1|BQ|A|1065
8BQD|1|BQ|G|1066
*
8BQD|1|BQ|C|1092
8BQD|1|BQ|A|1093
8BQD|1|BQ|U|1094
8BQD|1|BQ|U|1095
8BQD|1|BQ|U|1096
8BQD|1|BQ|G|1097
8BQD|1|BQ|A|1098
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BO
- 60S ribosomal protein L7-A
Coloring options: