J3_8BQD_033

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8BQD|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQD|1|2|A|213
8BQD|1|2|G|214
8BQD|1|2|A|215
8BQD|1|2|U|216
8BQD|1|2|A|217
8BQD|1|2|A|218
8BQD|1|2|A|219
8BQD|1|2|A|220
8BQD|1|2|A|221
8BQD|1|2|A|222
8BQD|1|2|U|223
8BQD|1|2|C|224
8BQD|1|2|A|225
8BQD|1|2|A|226
8BQD|1|2|U|227
8BQD|1|2|G|228
*
8BQD|1|2|C|237
8BQD|1|2|U|238
8BQD|1|2|C|239
8BQD|1|2|U|240
8BQD|1|2|U|241
8BQD|1|2|U|242
8BQD|1|2|G|243
*
8BQD|1|2|C|250
8BQD|1|2|A|251
8BQD|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A