J3_8BQD_034
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8BQD|1|2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_034 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1527
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BQD|1|2|U|633
8BQD|1|2|G|634
8BQD|1|2|A|635
*
8BQD|1|2|U|861
8BQD|1|2|A|862
8BQD|1|2|A|863
8BQD|1|2|U|864
8BQD|1|2|A|865
8BQD|1|2|G|866
*
8BQD|1|2|C|962
8BQD|1|2|A|963
8BQD|1|2|U|964
8BQD|1|2|U|965
8BQD|1|2|A|966
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain U
- 40S ribosomal protein S7-A
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- RPS22A isoform 1
- Chain c
- 40S ribosomal protein S23-A
- Chain f
- 40S ribosomal protein S27-A
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