J3_8BQX_019

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

8BQX|1|BQ|A|1065, 8BQX|1|BQ|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_019 not in the Motif Atlas

Homologous match to J3_5TBW_006

Geometric discrepancy: 0.3548

The information below is about J3_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.3

Basepair signature

cWW-cSS-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BQX|1|BQ|U|986
8BQX|1|BQ|U|987
*
8BQX|1|BQ|A|1062
8BQX|1|BQ|G|1063
8BQX|1|BQ|A|1064
8BQX|1|BQ|A|1065
8BQX|1|BQ|G|1066
*
8BQX|1|BQ|C|1092
8BQX|1|BQ|A|1093
8BQX|1|BQ|U|1094
8BQX|1|BQ|U|1095
8BQX|1|BQ|U|1096
8BQX|1|BQ|G|1097
8BQX|1|BQ|A|1098

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BJ

60S ribosomal protein L21-A

Chain BO

60S ribosomal protein L7-A