J3_8BR8_002

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCAUCC*GGC*GUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|LE|C|9
8BR8|1|LE|C|10
8BR8|1|LE|A|11
8BR8|1|LE|U|12
8BR8|1|LE|C|13
8BR8|1|LE|C|14
*
8BR8|1|LE|G|66
8BR8|1|LE|G|67
8BR8|1|LE|C|68
*
8BR8|1|LE|G|109
8BR8|1|LE|U|110
8BR8|1|LE|G|111

Current chains

Chain LE

5S rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LK

Ribosomal protein L10

Chain LL

Ribosomal protein L11

Chain LU

Ribosomal protein L21

Chain Lt

Large subunit ribosomal RNA; LSU rRNA