J3_8BR8_010

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCCCG*CCCGC*GCGCCG

Length

16 nucleotides

Bulged bases

8BR8|1|Lt|C|1310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|Lt|C|1295
8BR8|1|Lt|C|1296
8BR8|1|Lt|C|1297
8BR8|1|Lt|C|1298
8BR8|1|Lt|G|1299
*
8BR8|1|Lt|C|1308
8BR8|1|Lt|C|1309
8BR8|1|Lt|C|1310
8BR8|1|Lt|G|1311
8BR8|1|Lt|C|1312
*
8BR8|1|Lt|G|1452
8BR8|1|Lt|C|1453
8BR8|1|Lt|G|1454
8BR8|1|Lt|C|1455
8BR8|1|Lt|C|1456
8BR8|1|Lt|G|1457

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain La

60S ribosomal protein L27

Chain Lh

Ribosomal protein L34