J3_8BR8_015

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GG*CGGAACU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BR8_015 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1474

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.2

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8BR8|1|St|G|40
8BR8|1|St|G|41
*
8BR8|1|St|C|346
8BR8|1|St|G|347
8BR8|1|St|G|348
8BR8|1|St|A|349
8BR8|1|St|A|350
8BR8|1|St|C|351
8BR8|1|St|U|352
*
8BR8|1|St|A|377
8BR8|1|St|G|378
8BR8|1|St|C|379

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SK

Ribosomal protein S9

Chain SO

Ribosomal protein S23