J3_8BR8_018

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCCG*CCCAG*CGGGAG

Length

15 nucleotides

Bulged bases

8BR8|1|St|G|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|C|791
8BR8|1|St|C|792
8BR8|1|St|C|793
8BR8|1|St|G|794
*
8BR8|1|St|C|822
8BR8|1|St|C|823
8BR8|1|St|C|824
8BR8|1|St|A|825
8BR8|1|St|G|826
*
8BR8|1|St|C|833
8BR8|1|St|G|834
8BR8|1|St|G|835
8BR8|1|St|G|836
8BR8|1|St|A|837
8BR8|1|St|G|838

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SJ

Ribosomal protein S15A

Chain SY

40S ribosomal protein S21

Chain Sd

40S ribosomal protein S26

Chain Se

Ribosomal protein S27