J3_8BR8_021

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUCAAUCU*GCGCACCUCAC*GGCCG

Length

24 nucleotides

Bulged bases

8BR8|1|St|C|943, 8BR8|1|St|G|944, 8BR8|1|St|A|946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BR8_021 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.4577

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BR8|1|St|C|924
8BR8|1|St|U|925
8BR8|1|St|C|926
8BR8|1|St|A|927
8BR8|1|St|A|928
8BR8|1|St|U|929
8BR8|1|St|C|930
8BR8|1|St|U|931
*
8BR8|1|St|G|942
8BR8|1|St|C|943
8BR8|1|St|G|944
8BR8|1|St|C|945
8BR8|1|St|A|946
8BR8|1|St|C|947
8BR8|1|St|C|948
8BR8|1|St|U|949
8BR8|1|St|C|950
8BR8|1|St|A|951
8BR8|1|St|C|952
*
8BR8|1|St|G|1160
8BR8|1|St|G|1161
8BR8|1|St|C|1162
8BR8|1|St|C|1163
8BR8|1|St|G|1164

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain SV

Ribosomal protein S18

Chain SX

Ribosomal protein S20

Chain Sh

Ribosomal protein S29A