J3_8BR8_030
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CCAUCC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8BR8|1|LE|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_030 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.1494
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BR8|1|LE|C|9
8BR8|1|LE|C|10
8BR8|1|LE|A|11
8BR8|1|LE|U|12
8BR8|1|LE|C|13
8BR8|1|LE|C|14
*
8BR8|1|LE|G|66
8BR8|1|LE|G|67
*
8BR8|1|LE|U|110
8BR8|1|LE|G|111
Current chains
- Chain LE
- 5S rRNA
Nearby chains
- Chain LF
- Ribosomal protein L5
- Chain LK
- Ribosomal protein L10
- Chain LL
- Ribosomal protein L11
- Chain LU
- Ribosomal protein L21
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