J3_8BR8_034

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGGC*GGACGGC*GAGGACGGCG

Length

21 nucleotides

Bulged bases

8BR8|1|St|C|1121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|C|1077
8BR8|1|St|G|1078
8BR8|1|St|G|1079
8BR8|1|St|C|1080
*
8BR8|1|St|G|1094
8BR8|1|St|G|1095
8BR8|1|St|A|1096
8BR8|1|St|C|1097
8BR8|1|St|G|1098
8BR8|1|St|G|1099
8BR8|1|St|C|1100
*
8BR8|1|St|G|1113
8BR8|1|St|A|1114
8BR8|1|St|G|1115
8BR8|1|St|G|1116
8BR8|1|St|A|1117
8BR8|1|St|C|1118
8BR8|1|St|G|1119
8BR8|1|St|G|1120
8BR8|1|St|C|1121
8BR8|1|St|G|1122

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SF

Ribosomal protein S5

Chain ST

Ribosomal protein S16

Chain SU

Ribosomal protein S17

Chain SX

Ribosomal protein S20

Chain Sg

Ribosomal protein S28

Chain Sh

Ribosomal protein S29A