J3_8BRM_005
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGAG*CGCCG*UCGGAG
- Length
- 15 nucleotides
- Bulged bases
- 8BRM|1|Lt|A|613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BRM_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.2161
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BRM|1|Lt|C|545
8BRM|1|Lt|G|546
8BRM|1|Lt|A|547
8BRM|1|Lt|G|548
*
8BRM|1|Lt|C|580
8BRM|1|Lt|G|581
8BRM|1|Lt|C|582
8BRM|1|Lt|C|583
8BRM|1|Lt|G|584
*
8BRM|1|Lt|U|609
8BRM|1|Lt|C|610
8BRM|1|Lt|G|611
8BRM|1|Lt|G|612
8BRM|1|Lt|A|613
8BRM|1|Lt|G|614
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain LS
- Ribosomal protein L19
- Chain Lh
- Ribosomal protein L34
- Chain Lq
- Ribosomal protein L37a
Coloring options: