J3_8BRM_007

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAGGGG*CGG*UCUA

Length

14 nucleotides

Bulged bases

8BRM|1|Lt|G|1166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BRM_007 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1223

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8BRM|1|Lt|U|1163
8BRM|1|Lt|G|1164
8BRM|1|Lt|A|1165
8BRM|1|Lt|G|1166
8BRM|1|Lt|G|1167
8BRM|1|Lt|G|1168
8BRM|1|Lt|G|1169
*
8BRM|1|Lt|C|1489
8BRM|1|Lt|G|1490
8BRM|1|Lt|G|1491
*
8BRM|1|Lt|U|1503
8BRM|1|Lt|C|1504
8BRM|1|Lt|U|1505
8BRM|1|Lt|A|1506

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain Lh

Ribosomal protein L34